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Code Issues Releases Packages Activity

Try again wit hthe corret param

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James Fellows Yates 2022-11-03 15:02:22 +01:00
parent 93f38b14a8
commit 461482d22a
1 changed files with 2 additions and 3 deletions
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subworkflows/local/profiling.nf
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@ -274,9 +274,8 @@ workflow PROFILING {
reads: [ it[0] + it[2], it[1] ] reads: [ it[0] + it[2], it[1] ]
db: it[3] db: it[3]
} }
// Hardcode to _always_ produce the report file (which is our basic otput, and goes into raw_profiles) // Hardcode to _always_ produce the report file (which is our basic otput, and goes into)
save_report = true KRAKENUNIQ_PRELOADEDKRAKENUNIQ ( ch_input_for_krakenuniq.reads, ch_input_for_krakenuniq.db, params.krakenuniq_ram_chunk_size, params.krakenuniq_save_reads, true, params.krakenuniq_save_readclassifications )
KRAKENUNIQ_PRELOADEDKRAKENUNIQ ( ch_input_for_krakenuniq.reads, ch_input_for_krakenuniq.db, params.krakenuniq_ram_chunk_size, params.krakenuniq_save_reads, save_report, params.krakenuniq_save_readclassification )
ch_multiqc_files = ch_multiqc_files.mix( KRAKENUNIQ_PRELOADEDKRAKENUNIQ.out.report ) ch_multiqc_files = ch_multiqc_files.mix( KRAKENUNIQ_PRELOADEDKRAKENUNIQ.out.report )
ch_versions = ch_versions.mix( KRAKENUNIQ_PRELOADEDKRAKENUNIQ.out.versions.first() ) ch_versions = ch_versions.mix( KRAKENUNIQ_PRELOADEDKRAKENUNIQ.out.versions.first() )
ch_raw_classifications = ch_raw_classifications.mix( KRAKENUNIQ_PRELOADEDKRAKENUNIQ.out.classified_assignment ) ch_raw_classifications = ch_raw_classifications.mix( KRAKENUNIQ_PRELOADEDKRAKENUNIQ.out.classified_assignment )