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sofstam 2022-11-23 09:08:22 +01:00
parent 30af26a8b3
commit 481f90589c
2 changed files with 2 additions and 2 deletions
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2
subworkflows/local/longread_hostremoval.nf
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@ -45,7 +45,7 @@ workflow LONGREAD_HOSTREMOVAL {
ch_versions = ch_versions.mix( SAMTOOLS_INDEX.out.versions.first() ) ch_versions = ch_versions.mix( SAMTOOLS_INDEX.out.versions.first() )
bam_bai = MINIMAP2_ALIGN.out.bam bam_bai = MINIMAP2_ALIGN.out.bam
.join(SAMTOOLS_INDEX.out.bai,by:[0], remainder: true) .join(SAMTOOLS_INDEX.out.bai, remainder: true)
SAMTOOLS_STATS ( bam_bai, reference ) SAMTOOLS_STATS ( bam_bai, reference )
ch_versions = ch_versions.mix(SAMTOOLS_STATS.out.versions.first()) ch_versions = ch_versions.mix(SAMTOOLS_STATS.out.versions.first())

2
subworkflows/local/shortread_hostremoval.nf
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@ -42,7 +42,7 @@ workflow SHORTREAD_HOSTREMOVAL {
ch_versions = ch_versions.mix( SAMTOOLS_INDEX.out.versions.first() ) ch_versions = ch_versions.mix( SAMTOOLS_INDEX.out.versions.first() )
bam_bai = BOWTIE2_ALIGN.out.bam bam_bai = BOWTIE2_ALIGN.out.bam
.join(SAMTOOLS_INDEX.out.bai, by:[0], remainder: true) .join(SAMTOOLS_INDEX.out.bai, remainder: true)
SAMTOOLS_STATS ( bam_bai, reference ) SAMTOOLS_STATS ( bam_bai, reference )
ch_versions = ch_versions.mix(SAMTOOLS_STATS.out.versions.first()) ch_versions = ch_versions.mix(SAMTOOLS_STATS.out.versions.first())