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Remove unnecessary extra point
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@ -30,11 +30,10 @@ On release, automated continuous integration tests run the pipeline on a full-si
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1. Read QC ([`FastQC`](https://www.bioinformatics.babraham.ac.uk/projects/fastqc/))
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1. Read QC ([`FastQC`](https://www.bioinformatics.babraham.ac.uk/projects/fastqc/))
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2. Performs optional read pre-processing
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2. Performs optional read pre-processing
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- Adapter clipping and merging
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- Adapter clipping and merging (short, and nanopore reads)
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- Low complexity filtering
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- Low complexity filtering
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- Host read removal
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- Host read removal
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- Run merging
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- Run merging
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- Adapter and quality trimming of Nanopore reads
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3. Performs taxonomic profiling a choice of:
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3. Performs taxonomic profiling a choice of:
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- Kraken2
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- Kraken2
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- MetaPhlAn3
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- MetaPhlAn3
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