diff --git a/modules/nf-core/modules/filtlong/main.nf b/modules/nf-core/modules/filtlong/main.nf index 9dbf05b..afaa938 100644 --- a/modules/nf-core/modules/filtlong/main.nf +++ b/modules/nf-core/modules/filtlong/main.nf @@ -12,7 +12,8 @@ process FILTLONG { output: tuple val(meta), path("*.fastq.gz"), emit: reads - path "versions.yml" , emit: versions + tuple val(meta), path("*.log") , emit: log + path "versions.yml" , emit: versions when: task.ext.when == null || task.ext.when @@ -27,6 +28,7 @@ process FILTLONG { $short_reads \\ $args \\ $longreads \\ + 2> ${prefix}.log \\ | gzip -n > ${prefix}.fastq.gz cat <<-END_VERSIONS > versions.yml diff --git a/modules/nf-core/modules/filtlong/meta.yml b/modules/nf-core/modules/filtlong/meta.yml index b3626e6..a50b452 100644 --- a/modules/nf-core/modules/filtlong/meta.yml +++ b/modules/nf-core/modules/filtlong/meta.yml @@ -45,6 +45,11 @@ output: type: file description: Filtered (compressed) fastq file pattern: "*.fastq.gz" + - log: + type: file + description: Standard error logging file containing summary statistics + pattern: "*.log" authors: - "@d4straub" + - "@sofstam"