diff --git a/nextflow.config b/nextflow.config index 04273f1..95daba9 100644 --- a/nextflow.config +++ b/nextflow.config @@ -81,18 +81,18 @@ params { save_runmerged_reads = false // Host Removal - perform_shortread_hostremoval = false - shortread_hostremoval_reference = null - shortread_hostremoval_index = null - longread_hostremoval_index = null - save_hostremoval_index = false - save_hostremoval_mapped = false - save_hostremoval_unmapped = false - save_minimap2_hostremoval_index = false - save_minimap2_hostremoval_mapped = false - save_minimap2_hostremoval_unmapped = false - save_samtools_unmapped_bam = false - save_minimap2_unmapped_fq = false + perform_shortread_hostremoval = false + shortread_hostremoval_reference = null + shortread_hostremoval_index = null + save_hostremoval_index = false + save_hostremoval_mapped = false + save_hostremoval_unmapped = false + longread_hostremoval_index = null + save_minimap2_hostremoval_index = false + save_minimap2_hostremoval_mapped = false + save_samtools_unmapped_bam = false + save_minimap2_unmapped_fq = false + // MALT run_malt = false