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filter fasta inputs for mOTUs;
fix the typo for nopreprocessing in nextflow.config.
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2 changed files with 5 additions and 1 deletions
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@ -192,7 +192,7 @@ profiles {
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test { includeConfig 'conf/test.config' }
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test_full { includeConfig 'conf/test_full.config' }
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test_noprofiling { includeConfig 'conf/test_noprofiling.config' }
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test_nopreprocessing { includeConfig 'conf/test_preprocessing.config' }
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test_nopreprocessing { includeConfig 'conf/test_nopreprocessing.config' }
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}
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// Load igenomes.config if required
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@ -190,6 +190,10 @@ workflow PROFILING {
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if ( params.run_motus ) {
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ch_input_for_motus = ch_input_for_profiling.motus
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.filter{
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if (it[0].is_fasta) log.warn "[nf-core/taxprofiler] mOTUs currently does not accept FASTA files as input. Skipping mOTUs for sample ${it[0].id}."
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!it[0].is_fasta
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}
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.multiMap {
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it ->
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reads: [it[0] + it[2], it[1]]
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