diff --git a/nextflow.config b/nextflow.config index 9f3b103..588c0cf 100644 --- a/nextflow.config +++ b/nextflow.config @@ -158,7 +158,8 @@ if (!params.igenomes_ignore) { // See https://apeltzer.github.io/post/03-julia-lang-nextflow/ for details on that. Once we have a common agreement on where to keep Julia packages, this is adjustable. env { - PYTHONNOUSERSITE = 1 + PYTHONNOUSERSITE = '1' + PYTHONUTF8 = '1' // MetaPhlAn3 may fail with a UnicodeDecodeError if the locale is not set appropriately. R_PROFILE_USER = "/.Rprofile" R_ENVIRON_USER = "/.Renviron" JULIA_DEPOT_PATH = "/usr/local/share/julia"