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1 changed files with 4 additions and 2 deletions
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@ -24,8 +24,10 @@ workflow SHORTREAD_ADAPTERREMOVAL {
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ADAPTERREMOVAL_SINGLE ( ch_input_for_adapterremoval.single, [] )
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ADAPTERREMOVAL_SINGLE ( ch_input_for_adapterremoval.single, [] )
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ADAPTERREMOVAL_PAIRED ( ch_input_for_adapterremoval.paired, [] )
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ADAPTERREMOVAL_PAIRED ( ch_input_for_adapterremoval.paired, [] )
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// due to the slightly ugly output implementation of the current AdapterRemoval2 version, each file
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/*
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// has to be exported in a separate channel, and we must manually recombine when necessary
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* Due to the ~slightly~ very ugly output implementation of the current AdapterRemoval2 version, each file
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* has to be exported in a separate channel and we must manually recombine when necessary.
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*/
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if ( params.shortread_clipmerge_mergepairs && !params.shortread_clipmerge_excludeunmerged ) {
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if ( params.shortread_clipmerge_mergepairs && !params.shortread_clipmerge_excludeunmerged ) {
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ch_adapterremoval_for_cat = ADAPTERREMOVAL_PAIRED.out.collapsed
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ch_adapterremoval_for_cat = ADAPTERREMOVAL_PAIRED.out.collapsed
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