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Moritz E. Beber 2022-04-02 17:05:46 +02:00
parent 41526e8a64
commit 4eab257d68
1 changed files with 4 additions and 2 deletions
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subworkflows/local/shortread_adapterremoval.nf
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@ -24,8 +24,10 @@ workflow SHORTREAD_ADAPTERREMOVAL {
ADAPTERREMOVAL_SINGLE ( ch_input_for_adapterremoval.single, [] ) ADAPTERREMOVAL_SINGLE ( ch_input_for_adapterremoval.single, [] )
ADAPTERREMOVAL_PAIRED ( ch_input_for_adapterremoval.paired, [] ) ADAPTERREMOVAL_PAIRED ( ch_input_for_adapterremoval.paired, [] )
// due to the slightly ugly output implementation of the current AdapterRemoval2 version, each file /*
// has to be exported in a separate channel, and we must manually recombine when necessary * Due to the ~slightly~ very ugly output implementation of the current AdapterRemoval2 version, each file
* has to be exported in a separate channel and we must manually recombine when necessary.
*/
if ( params.shortread_clipmerge_mergepairs && !params.shortread_clipmerge_excludeunmerged ) { if ( params.shortread_clipmerge_mergepairs && !params.shortread_clipmerge_excludeunmerged ) {
ch_adapterremoval_for_cat = ADAPTERREMOVAL_PAIRED.out.collapsed ch_adapterremoval_for_cat = ADAPTERREMOVAL_PAIRED.out.collapsed