mirror of
https://github.com/MillironX/taxprofiler.git
synced 2024-11-10 23:23:09 +00:00
Update usage.md
This commit is contained in:
parent
4e771ab2c7
commit
4f27998852
1 changed files with 1 additions and 1 deletions
|
@ -230,7 +230,7 @@ You can optionally save the FASTQ output of the run merging with the `--save_run
|
||||||
|
|
||||||
###### MALT
|
###### MALT
|
||||||
|
|
||||||
nf-core/taxprofiler uses MALT 0.4.1, which is a compatively old version. However it has been found that the most recent version of MALT (0.5.\*), at the time of writing, is broken. [The the LCA step appears not to be executed](http://megan.informatik.uni-tuebingen.de/t/lca-placement-failure-with-malt-v-0-5-2-and-0-5-3/1996/3), pushing all hits to the leaves of the taxonomy. However, if you need to use a more recent taxonomy map file with your databases, the output of `malt-build` from MALT 0.5.3 should be still be compatible with `malt-run` of 0.4.1.
|
nf-core/taxprofiler uses MALT 0.4.1, which is a compatively old version. However it has been found that the most recent version of MALT (0.5.\*), at the time of writing, is broken. [The LCA step appears not to be executed](http://megan.informatik.uni-tuebingen.de/t/lca-placement-failure-with-malt-v-0-5-2-and-0-5-3/1996/3), pushing all hits to the leaves of the taxonomy. However, if you need to use a more recent taxonomy map file with your databases, the output of `malt-build` from MALT 0.5.3 should be still be compatible with `malt-run` of 0.4.1.
|
||||||
|
|
||||||
### Updating the pipeline
|
### Updating the pipeline
|
||||||
|
|
||||||
|
|
Loading…
Reference in a new issue