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Roll back MALT version
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parent
3dcda7446b
commit
4ff2145e44
2 changed files with 4 additions and 5 deletions
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@ -49,7 +49,7 @@
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"git_sha": "abe025677cdd805cc93032341ab19885473c1a07"
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},
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"malt/run": {
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"git_sha": "72b96f4e504eef673f2b5c13560a9d90b669129b"
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"git_sha": "be8d7b3293cac26cc63e4dbfb364deb8ed6ec7e5"
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},
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"megan/rma2info": {
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"git_sha": "2d38566eca4cc15142b2ffa7c11837569b39aece"
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7
modules/nf-core/modules/malt/run/main.nf
generated
7
modules/nf-core/modules/malt/run/main.nf
generated
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@ -2,10 +2,10 @@ process MALT_RUN {
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tag "$meta.id"
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label 'process_high'
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conda (params.enable_conda ? "bioconda::malt=0.53" : null)
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conda (params.enable_conda ? "bioconda::malt=0.41" : null)
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container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
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'https://depot.galaxyproject.org/singularity/malt:0.53--hdfd78af_0' :
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'quay.io/biocontainers/malt:0.53--hdfd78af_0' }"
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'https://depot.galaxyproject.org/singularity/malt:0.41--1' :
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'quay.io/biocontainers/malt:0.41--1' }"
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input:
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tuple val(meta), path(fastqs)
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@ -33,7 +33,6 @@ process MALT_RUN {
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"""
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malt-run \\
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-J-Xmx${avail_mem}g \\
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-t $task.cpus \\
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-v \\
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-o . \\
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