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Code Issues Releases Packages Activity

Roll back MALT version

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This commit is contained in:
James Fellows Yates 2022-06-20 08:23:14 +02:00
parent 3dcda7446b
commit 4ff2145e44
2 changed files with 4 additions and 5 deletions
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2
modules.json
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@ -49,7 +49,7 @@
"git_sha": "abe025677cdd805cc93032341ab19885473c1a07" "git_sha": "abe025677cdd805cc93032341ab19885473c1a07"
}, },
"malt/run": { "malt/run": {
"git_sha": "72b96f4e504eef673f2b5c13560a9d90b669129b" "git_sha": "be8d7b3293cac26cc63e4dbfb364deb8ed6ec7e5"
}, },
"megan/rma2info": { "megan/rma2info": {
"git_sha": "2d38566eca4cc15142b2ffa7c11837569b39aece" "git_sha": "2d38566eca4cc15142b2ffa7c11837569b39aece"

7
modules/nf-core/modules/malt/run/main.nf generated
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@ -2,10 +2,10 @@ process MALT_RUN {
tag "$meta.id" tag "$meta.id"
label 'process_high' label 'process_high'
conda (params.enable_conda ? "bioconda::malt=0.53" : null) conda (params.enable_conda ? "bioconda::malt=0.41" : null)
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/malt:0.53--hdfd78af_0' : 'https://depot.galaxyproject.org/singularity/malt:0.41--1' :
'quay.io/biocontainers/malt:0.53--hdfd78af_0' }" 'quay.io/biocontainers/malt:0.41--1' }"
input: input:
tuple val(meta), path(fastqs) tuple val(meta), path(fastqs)
@ -33,7 +33,6 @@ process MALT_RUN {
""" """
malt-run \\ malt-run \\
-J-Xmx${avail_mem}g \\
-t $task.cpus \\ -t $task.cpus \\
-v \\ -v \\
-o . \\ -o . \\