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James Fellows Yates 2023-01-31 13:07:07 +01:00
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@ -171,7 +171,7 @@ By default nf-core/taxprofiler will only provide the `.log` file if PRINSEQ++ is
You will only find the `.fastq` files in the results directory if you provide ` --save_preprocessed_reads`. You will only find the `.fastq` files in the results directory if you provide ` --save_preprocessed_reads`.
> ⚠️ We do **not** recommend using Filtlong if you are performing filtering of low quality reads with ONT's basecaller Guppy. > ⚠️ We do **not** recommend using Filtlong if you are performing filtering of low quality reads with ONT's basecaller Guppy.
### Bowtie2 ### Bowtie2