From 54e885723340b67bd9f366c047599c5f88034eb3 Mon Sep 17 00:00:00 2001 From: "James A. Fellows Yates" Date: Tue, 7 Mar 2023 13:06:32 +0100 Subject: [PATCH] Reduce number of tests to check just each tool option is tested --- .github/workflows/ci.yml | 7 ------- 1 file changed, 7 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index ea98e78..0af37b5 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -32,16 +32,9 @@ jobs: - "--perform_longread_qc false" - "--perform_shortread_qc false" - "--shortread_qc_tool fastp" - - "--shortread_qc_tool fastp --shortread_qc_mergepairs --shortread_qc_includeunmerged" - - "--shortread_qc_tool fastp --shortread_qc_mergepairs" - "--shortread_qc_tool adapterremoval" - - "--shortread_qc_tool adapterremoval --shortread_qc_mergepairs --shortread_qc_includeunmerged" - - "--shortread_qc_tool adapterremoval --shortread_qc_mergepairs" - "--shortread_complexityfilter_tool bbduk" - "--shortread_complexityfilter_tool prinseqplusplus" - - "--perform_runmerging" - - "--perform_runmerging --shortread_qc_mergepairs" - - "--shortread_complexityfilter false --perform_shortread_hostremoval" steps: - name: Check out pipeline code