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Remove necessity of patch
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parent
ff1670169a
commit
56bae85755
4 changed files with 5 additions and 26 deletions
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@ -119,8 +119,7 @@
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},
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"minimap2/index": {
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"branch": "master",
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"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905",
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"patch": "modules/nf-core/minimap2/index/minimap2-index.diff"
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"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
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},
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"motus/merge": {
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"branch": "master",
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6
modules/nf-core/minimap2/index/main.nf
generated
6
modules/nf-core/minimap2/index/main.nf
generated
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@ -7,11 +7,11 @@ process MINIMAP2_INDEX {
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'quay.io/biocontainers/minimap2:2.21--h5bf99c6_0' }"
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input:
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path fasta
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tuple val(meta), path(fasta)
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output:
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path "*.mmi" , emit: index
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path "versions.yml" , emit: versions
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tuple val(meta), path("*.mmi"), emit: index
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path "versions.yml" , emit: versions
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when:
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task.ext.when == null || task.ext.when
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20
modules/nf-core/minimap2/index/minimap2-index.diff
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20
modules/nf-core/minimap2/index/minimap2-index.diff
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@ -1,20 +0,0 @@
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Changes in module 'nf-core/minimap2/index'
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--- modules/nf-core/minimap2/index/main.nf
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+++ modules/nf-core/minimap2/index/main.nf
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@@ -7,11 +7,11 @@
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'quay.io/biocontainers/minimap2:2.21--h5bf99c6_0' }"
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input:
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- tuple val(meta), path(fasta)
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+ path fasta
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output:
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- tuple val(meta), path("*.mmi"), emit: index
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- path "versions.yml" , emit: versions
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+ path "*.mmi" , emit: index
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+ path "versions.yml" , emit: versions
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when:
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task.ext.when == null || task.ext.when
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************************************************************
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@ -18,7 +18,7 @@ workflow LONGREAD_HOSTREMOVAL {
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ch_multiqc_files = Channel.empty()
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if ( !params.longread_hostremoval_index ) {
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ch_minimap2_index = MINIMAP2_INDEX ( reference ).index
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ch_minimap2_index = MINIMAP2_INDEX ( [ [], reference ] ).index.map { it[1] }
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ch_versions = ch_versions.mix( MINIMAP2_INDEX.out.versions )
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} else {
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ch_minimap2_index = index
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