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Update samtools view

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This commit is contained in:
ljmesi 2022-05-03 11:09:54 +02:00
parent 17039ebc6b
commit 58d4dec70b
2 changed files with 13 additions and 1 deletions
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2
modules.json
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@ -73,7 +73,7 @@
"git_sha": "897c33d5da084b61109500ee44c01da2d3e4e773" "git_sha": "897c33d5da084b61109500ee44c01da2d3e4e773"
}, },
"samtools/view": { "samtools/view": {
"git_sha": "12afb6b0faf3cabf769c9a2a7dd477e3f066eac0" "git_sha": "6b64f9cb6c3dd3577931cc3cd032d6fb730000ce"
}, },
"untar": { "untar": {
"git_sha": "e080f4c8acf5760039ed12ec1f206170f3f9a918" "git_sha": "e080f4c8acf5760039ed12ec1f206170f3f9a918"

12
modules/nf-core/modules/samtools/view/main.nf generated
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@ -41,4 +41,16 @@ process SAMTOOLS_VIEW {
samtools: \$(echo \$(samtools --version 2>&1) | sed 's/^.*samtools //; s/Using.*\$//') samtools: \$(echo \$(samtools --version 2>&1) | sed 's/^.*samtools //; s/Using.*\$//')
END_VERSIONS END_VERSIONS
""" """
stub:
def prefix = task.ext.prefix ?: "${meta.id}"
"""
touch ${prefix}.bam
touch ${prefix}.cram
cat <<-END_VERSIONS > versions.yml
"${task.process}":
samtools: \$(echo \$(samtools --version 2>&1) | sed 's/^.*samtools //; s/Using.*\$//')
END_VERSIONS
"""
} }