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Update samtools view
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parent
17039ebc6b
commit
58d4dec70b
2 changed files with 13 additions and 1 deletions
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@ -73,7 +73,7 @@
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"git_sha": "897c33d5da084b61109500ee44c01da2d3e4e773"
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"git_sha": "897c33d5da084b61109500ee44c01da2d3e4e773"
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},
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},
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"samtools/view": {
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"samtools/view": {
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"git_sha": "12afb6b0faf3cabf769c9a2a7dd477e3f066eac0"
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"git_sha": "6b64f9cb6c3dd3577931cc3cd032d6fb730000ce"
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},
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},
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"untar": {
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"untar": {
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"git_sha": "e080f4c8acf5760039ed12ec1f206170f3f9a918"
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"git_sha": "e080f4c8acf5760039ed12ec1f206170f3f9a918"
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12
modules/nf-core/modules/samtools/view/main.nf
generated
12
modules/nf-core/modules/samtools/view/main.nf
generated
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@ -41,4 +41,16 @@ process SAMTOOLS_VIEW {
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samtools: \$(echo \$(samtools --version 2>&1) | sed 's/^.*samtools //; s/Using.*\$//')
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samtools: \$(echo \$(samtools --version 2>&1) | sed 's/^.*samtools //; s/Using.*\$//')
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END_VERSIONS
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END_VERSIONS
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"""
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"""
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stub:
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def prefix = task.ext.prefix ?: "${meta.id}"
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"""
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touch ${prefix}.bam
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touch ${prefix}.cram
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cat <<-END_VERSIONS > versions.yml
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"${task.process}":
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samtools: \$(echo \$(samtools --version 2>&1) | sed 's/^.*samtools //; s/Using.*\$//')
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END_VERSIONS
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"""
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}
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}
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