diff --git a/modules.json b/modules.json index ce1fbc5..043e4ad 100644 --- a/modules.json +++ b/modules.json @@ -70,7 +70,7 @@ "git_sha": "f1c5384c31e985591716afdd732cf8c2ae29d05b" }, "samtools/bam2fq": { - "git_sha": "897c33d5da084b61109500ee44c01da2d3e4e773" + "git_sha": "5510ea39fe638594bc26ac34cadf4a84bf27d159" }, "samtools/view": { "git_sha": "6b64f9cb6c3dd3577931cc3cd032d6fb730000ce" @@ -80,4 +80,4 @@ } } } -} +} \ No newline at end of file diff --git a/modules/nf-core/modules/samtools/bam2fq/main.nf b/modules/nf-core/modules/samtools/bam2fq/main.nf index 5d6aa79..9301d1d 100644 --- a/modules/nf-core/modules/samtools/bam2fq/main.nf +++ b/modules/nf-core/modules/samtools/bam2fq/main.nf @@ -45,7 +45,7 @@ process SAMTOOLS_BAM2FQ { bam2fq \\ $args \\ -@ $task.cpus \\ - $inputbam >${prefix}_interleaved.fq.gz + $inputbam | gzip --no-name > ${prefix}_interleaved.fq.gz cat <<-END_VERSIONS > versions.yml "${task.process}":