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Syncronise local modules with other generic container modules
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parent
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2 changed files with 5 additions and 5 deletions
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@ -2,10 +2,10 @@ process KRAKEN2_STANDARD_REPORT {
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tag "$meta.id"
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label 'process_single'
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conda "conda-forge::sed=4.8"
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conda "conda-forge::sed=4.7"
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container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
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'https://containers.biocontainers.pro/s3/SingImgsRepo/biocontainers/v1.2.0_cv2/biocontainers_v1.2.0_cv2.img' :
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'biocontainers/biocontainers:v1.2.0_cv2' }"
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'https://depot.galaxyproject.org/singularity/ubuntu:20.04' :
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'ubuntu:20.04' }"
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input:
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tuple val(meta), path(report)
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@ -4,8 +4,8 @@ process KRONA_CLEANUP {
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conda "conda-forge::sed=4.7"
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container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
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'https://containers.biocontainers.pro/s3/SingImgsRepo/biocontainers/v1.2.0_cv1/biocontainers_v1.2.0_cv1.img' :
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'biocontainers/biocontainers:v1.2.0_cv1' }"
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'https://depot.galaxyproject.org/singularity/ubuntu:20.04' :
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'ubuntu:20.04' }"
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input:
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tuple val(meta), path(krona, stageAs: 'uncleaned.krona.txt')
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