diff --git a/conf/modules.config b/conf/modules.config index 46320cf..2ea2f1f 100644 --- a/conf/modules.config +++ b/conf/modules.config @@ -293,6 +293,14 @@ process { ] } + withName: KRONA_IMPORTKRAKEN { + publishDir = [ + path: { "${params.outdir}/krona" }, + mode: params.publish_dir_mode, + pattern: '*.{html}' + ] + } + withName: METAPHLAN3 { ext.args = { "${meta.db_params}" } ext.prefix = params.perform_runmerging ? { "${meta.id}-${meta.db_name}" } : { "${meta.id}-${meta.run_accession}-${meta.db_name}" }