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Revert "Update subworkflows/local/profiling.nf"

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This reverts commit b7d0557ee0.
This commit is contained in:
James Fellows Yates 2022-04-20 09:23:38 +02:00
parent b7d0557ee0
commit 60d232d62c
1 changed files with 1 additions and 3 deletions
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subworkflows/local/profiling.nf
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@ -76,9 +76,7 @@ workflow PROFILING {
ch_input_for_centrifuge = ch_input_for_profiling.centrifuge ch_input_for_centrifuge = ch_input_for_profiling.centrifuge
.filter{ .filter{
if (it[0].is_fasta) { if (it[0].is_fasta) log.warn "[nf-core/taxprofiler] Centrifuge currently does not accept FASTA files as input. Skipping Centrifuge for sample " + it[0].id
WorkflowTaxprofiler.logMessage("Centrifuge currently does not accept FASTA files as input. Skipping Centrifuge for sample ${it[0].id}.", log)
}
!it[0].is_fasta !it[0].is_fasta
} }
.multiMap { .multiMap {