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Revert "Update subworkflows/local/profiling.nf"
This reverts commit b7d0557ee0
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b7d0557ee0
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1 changed files with 1 additions and 3 deletions
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@ -76,9 +76,7 @@ workflow PROFILING {
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ch_input_for_centrifuge = ch_input_for_profiling.centrifuge
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ch_input_for_centrifuge = ch_input_for_profiling.centrifuge
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.filter{
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.filter{
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if (it[0].is_fasta) {
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if (it[0].is_fasta) log.warn "[nf-core/taxprofiler] Centrifuge currently does not accept FASTA files as input. Skipping Centrifuge for sample " + it[0].id
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WorkflowTaxprofiler.logMessage("Centrifuge currently does not accept FASTA files as input. Skipping Centrifuge for sample ${it[0].id}.", log)
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}
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!it[0].is_fasta
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!it[0].is_fasta
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}
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}
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.multiMap {
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.multiMap {
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