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@ -109,10 +109,10 @@ workflow PROFILING {
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}
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MEGAN_RMA2INFO (ch_maltrun_for_megan, params.malt_generate_megansummary )
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ch_multiqc_files = ch_multiqc_files.mix( MALT_RUN.out.log.collect{it[1]}.ifEmpty([]) )
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ch_versions = ch_versions.mix( MALT_RUN.out.versions.first(), MEGAN_RMA2INFO.out.versions.first() )
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ch_multiqc_files = ch_multiqc_files.mix( MALT_RUN.out.log.collect{it[1]}.ifEmpty([]) )
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ch_versions = ch_versions.mix( MALT_RUN.out.versions.first(), MEGAN_RMA2INFO.out.versions.first() )
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ch_raw_classifications = ch_raw_classifications.mix( ch_maltrun_for_megan )
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ch_raw_profiles = ch_raw_profiles.mix( MEGAN_RMA2INFO.out.txt )
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ch_raw_profiles = ch_raw_profiles.mix( MEGAN_RMA2INFO.out.txt )
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}
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