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Update channel assignment alignment in profiling subworkflow

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Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
This commit is contained in:
Thomas A. Christensen II 2022-06-28 13:13:37 +00:00
parent 069370db86
commit 6673ccf8d8
Signed by: millironx
GPG key ID: 139C07724802BC5D
1 changed files with 3 additions and 3 deletions
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subworkflows/local/profiling.nf
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@ -109,10 +109,10 @@ workflow PROFILING {
} }
MEGAN_RMA2INFO (ch_maltrun_for_megan, params.malt_generate_megansummary ) MEGAN_RMA2INFO (ch_maltrun_for_megan, params.malt_generate_megansummary )
ch_multiqc_files = ch_multiqc_files.mix( MALT_RUN.out.log.collect{it[1]}.ifEmpty([]) ) ch_multiqc_files = ch_multiqc_files.mix( MALT_RUN.out.log.collect{it[1]}.ifEmpty([]) )
ch_versions = ch_versions.mix( MALT_RUN.out.versions.first(), MEGAN_RMA2INFO.out.versions.first() ) ch_versions = ch_versions.mix( MALT_RUN.out.versions.first(), MEGAN_RMA2INFO.out.versions.first() )
ch_raw_classifications = ch_raw_classifications.mix( ch_maltrun_for_megan ) ch_raw_classifications = ch_raw_classifications.mix( ch_maltrun_for_megan )
ch_raw_profiles = ch_raw_profiles.mix( MEGAN_RMA2INFO.out.txt ) ch_raw_profiles = ch_raw_profiles.mix( MEGAN_RMA2INFO.out.txt )
} }