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Sofia Stamouli 2022-11-04 12:05:23 +01:00
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@ -50,7 +50,7 @@ On release, automated continuous integration tests run the pipeline on a full-si
- [bracken](https://ccb.jhu.edu/software/bracken/) - [bracken](https://ccb.jhu.edu/software/bracken/)
6. Standardises output tables 6. Standardises output tables
7. Present QC for raw reads ([`MultiQC`](http://multiqc.info/)) 7. Present QC for raw reads ([`MultiQC`](http://multiqc.info/))
7. Plotting Kraken2, Centrifuge, Kaiju and MALT results ([`Krona`](https://hpc.nih.gov/apps/kronatools.html)) 8. Plotting Kraken2, Centrifuge, Kaiju and MALT results ([`Krona`](https://hpc.nih.gov/apps/kronatools.html))
## Quick Start ## Quick Start