From 6ebfdcd017847a37512259faeecb00fc9cf37cb3 Mon Sep 17 00:00:00 2001 From: sofstam Date: Fri, 23 Dec 2022 13:40:22 +0100 Subject: [PATCH] Add path parameters --- workflows/taxprofiler.nf | 8 +++++--- 1 file changed, 5 insertions(+), 3 deletions(-) diff --git a/workflows/taxprofiler.nf b/workflows/taxprofiler.nf index e398f6e..aa83a24 100644 --- a/workflows/taxprofiler.nf +++ b/workflows/taxprofiler.nf @@ -11,9 +11,11 @@ WorkflowTaxprofiler.initialise(params, log) // TODO nf-core: Add all file path parameters for the pipeline to the list below // Check input path parameters to see if they exist -def checkPathParamList = [ params.input, params.databases, params.hostremoval_reference, - params.shortread_hostremoval_index, params.multiqc_config, - params.shortread_qc_adapterlist +def checkPathParamList = [ params.input, params.genome, params.databases, + params.outdir, params.longread_hostremoval_index + params.hostremoval_reference, params.shortread_hostremoval_index, + params.multiqc_config, params.shortread_qc_adapterlist, + params.krona_taxonomy_directory ] for (param in checkPathParamList) { if (param) { file(param, checkIfExists: true) } }