diff --git a/nextflow_schema.json b/nextflow_schema.json index 59131b6..5c60775 100644 --- a/nextflow_schema.json +++ b/nextflow_schema.json @@ -753,7 +753,10 @@ "properties": { "preprocessing_qc_tool": { "type": "string", - "default": "fastqc" + "default": "fastqc", + "enum": ["fastqc", "falco"], + "help_text": "Falco is designed as a drop-in replacement for FastQC but written in C++ for faster computation. We particularly recommend using falco when using long reads (due to reduced memory constraints), however is also applicable for short reads.", + "description": "Specify the tool used for quality control of raw sequencing reads" } } }