From 735212c9eeea3fb94b2d526e6335bf7b081ffdb9 Mon Sep 17 00:00:00 2001 From: James Fellows Yates Date: Mon, 6 Mar 2023 10:47:36 +0100 Subject: [PATCH] Fix the non-updated KAIJU2TABLE name --- subworkflows/local/profiling.nf | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/subworkflows/local/profiling.nf b/subworkflows/local/profiling.nf index 85885fc..858d3aa 100644 --- a/subworkflows/local/profiling.nf +++ b/subworkflows/local/profiling.nf @@ -272,10 +272,10 @@ workflow PROFILING { ch_versions = ch_versions.mix( KAIJU_KAIJU.out.versions.first() ) ch_raw_classifications = ch_raw_classifications.mix( KAIJU_KAIJU.out.results ) - KAIJU_KAIJU2TABLE ( KAIJU_KAIJU.out.results, ch_input_for_kaiju.db, params.kaiju_taxon_rank) - ch_versions = ch_versions.mix( KAIJU_KAIJU2TABLE.out.versions ) - ch_multiqc_files = ch_multiqc_files.mix( KAIJU_KAIJU2TABLE.out.summary ) - ch_raw_profiles = ch_raw_profiles.mix( KAIJU_KAIJU2TABLE.out.summary ) + KAIJU_KAIJU2TABLE_SINGLE ( KAIJU_KAIJU_SINGLE.out.results, ch_input_for_kaiju.db, params.kaiju_taxon_rank) + ch_versions = ch_versions.mix( KAIJU_KAIJU2TABLE_SINGLE.out.versions ) + ch_multiqc_files = ch_multiqc_files.mix( KAIJU_KAIJU2TABLE_SINGLE.out.summary ) + ch_raw_profiles = ch_raw_profiles.mix( KAIJU_KAIJU2TABLE_SINGLE.out.summary ) } if ( params.run_diamond ) {