From 767663d975040baed045d7dcc49a290e292b54a8 Mon Sep 17 00:00:00 2001 From: "Moritz E. Beber" Date: Fri, 14 Oct 2022 12:18:55 +0200 Subject: [PATCH] chore: add Bracken to test configs --- conf/test.config | 1 + conf/test_nopreprocessing.config | 1 + conf/test_noprofiling.config | 1 + conf/test_nothing.config | 1 + conf/test_pep.config | 1 + 5 files changed, 5 insertions(+) diff --git a/conf/test.config b/conf/test.config index d5dcd67..777d9bf 100644 --- a/conf/test.config +++ b/conf/test.config @@ -34,6 +34,7 @@ params { hostremoval_reference = 'https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/genomics/homo_sapiens/genome/genome.fasta' run_kaiju = true run_kraken2 = true + run_bracken = true run_malt = true run_metaphlan3 = true run_centrifuge = true diff --git a/conf/test_nopreprocessing.config b/conf/test_nopreprocessing.config index 3908b56..357f76f 100644 --- a/conf/test_nopreprocessing.config +++ b/conf/test_nopreprocessing.config @@ -33,6 +33,7 @@ params { hostremoval_reference = 'https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/genomics/homo_sapiens/genome/genome.fasta' run_kaiju = true run_kraken2 = true + run_bracken = true run_malt = true run_metaphlan3 = true run_centrifuge = true diff --git a/conf/test_noprofiling.config b/conf/test_noprofiling.config index 12c7185..59ed0da 100644 --- a/conf/test_noprofiling.config +++ b/conf/test_noprofiling.config @@ -34,6 +34,7 @@ params { hostremoval_reference = 'https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/genomics/homo_sapiens/genome/genome.fasta' run_kaiju = false run_kraken2 = false + run_bracken = false run_malt = false run_metaphlan3 = false run_centrifuge = false diff --git a/conf/test_nothing.config b/conf/test_nothing.config index c0ecece..df09613 100644 --- a/conf/test_nothing.config +++ b/conf/test_nothing.config @@ -33,6 +33,7 @@ params { hostremoval_reference = 'https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/genomics/homo_sapiens/genome/genome.fasta' run_kaiju = false run_kraken2 = false + run_bracken = false run_malt = false run_metaphlan3 = false run_centrifuge = false diff --git a/conf/test_pep.config b/conf/test_pep.config index 7f8c95d..762ebb3 100644 --- a/conf/test_pep.config +++ b/conf/test_pep.config @@ -19,6 +19,7 @@ params { hostremoval_reference = 'https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/genomics/homo_sapiens/genome/genome.fasta' run_kaiju = true run_kraken2 = true + run_bracken = true run_malt = true run_metaphlan3 = true run_centrifuge = true