From 78182c2a8ca72d17b3a1004f100180d44439db42 Mon Sep 17 00:00:00 2001
From: James Fellows Yates <jfy133@gmail.com>
Date: Mon, 11 Apr 2022 13:40:24 +0200
Subject: [PATCH] Add comma

---
 workflows/taxprofiler.nf | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/workflows/taxprofiler.nf b/workflows/taxprofiler.nf
index abb330d..95e3588 100644
--- a/workflows/taxprofiler.nf
+++ b/workflows/taxprofiler.nf
@@ -125,7 +125,7 @@ workflow TAXPROFILER {
     } else {
         ch_longreads_preprocessed = INPUT_CHECK.out.nanopore
     }
-    
+
     /*
         SUBWORKFLOW: COMPLEXITY FILTERING
     */
@@ -146,12 +146,12 @@ workflow TAXPROFILER {
     } else {
         ch_shortreads_hostremoved = ch_shortreads_filtered
     }
-    
+
     /*
         SUBWORKFLOW: PROFILING
     */
 
-    PROFILING ( ch_shortreads_hostremoved ch_longreads_preprocessed, DB_CHECK.out.dbs )
+    PROFILING ( ch_shortreads_hostremoved, ch_longreads_preprocessed, DB_CHECK.out.dbs )
     ch_versions = ch_versions.mix( PROFILING.out.versions )
 
     /*
@@ -191,7 +191,7 @@ workflow TAXPROFILER {
     if (params.shortread_hostremoval) {
         ch_multiqc_files = ch_multiqc_files.mix(SHORTREAD_HOSTREMOVAL.out.mqc.collect{it[1]}.ifEmpty([]))
     }
-    
+
     ch_multiqc_files = ch_multiqc_files.mix( PROFILING.out.mqc )
 
     // TODO create multiQC module for metaphlan