diff --git a/.github/PULL_REQUEST_TEMPLATE.md b/.github/PULL_REQUEST_TEMPLATE.md index ae4285a..333c4f1 100644 --- a/.github/PULL_REQUEST_TEMPLATE.md +++ b/.github/PULL_REQUEST_TEMPLATE.md @@ -15,8 +15,7 @@ Learn more about contributing: [CONTRIBUTING.md](https://github.com/nf-core/taxp - [ ] This comment contains a description of changes (with reason). - [ ] If you've fixed a bug or added code that should be tested, add tests! -- [ ] If you've added a new tool - have you followed the pipeline conventions in the [contribution docs](https://github.com/nf-core/taxprofiler/tree/master/.github/CONTRIBUTING.md) -- [ ] If necessary, also make a PR on the nf-core/taxprofiler _branch_ on the [nf-core/test-datasets](https://github.com/nf-core/test-datasets) repository. +- [ ] If you've added a new tool - have you followed the pipeline conventions in the [contribution docs](https://github.com/nf-core/taxprofiler/tree/master/.github/CONTRIBUTING.md)- [ ] If necessary, also make a PR on the nf-core/taxprofiler _branch_ on the [nf-core/test-datasets](https://github.com/nf-core/test-datasets) repository. - [ ] Make sure your code lints (`nf-core lint`). - [ ] Ensure the test suite passes (`nextflow run . -profile test,docker --outdir `). - [ ] Usage Documentation in `docs/usage.md` is updated. diff --git a/assets/email_template.html b/assets/email_template.html index f40addd..af9bb07 100644 --- a/assets/email_template.html +++ b/assets/email_template.html @@ -4,7 +4,7 @@ - + nf-core/taxprofiler Pipeline Report diff --git a/docs/images/taxprofiler_tube.pdf b/docs/images/taxprofiler_tube.pdf index b0b10bb..bf696cf 100644 Binary files a/docs/images/taxprofiler_tube.pdf and b/docs/images/taxprofiler_tube.pdf differ diff --git a/docs/images/taxprofiler_tube.png b/docs/images/taxprofiler_tube.png index 1a3b464..c7b3862 100644 Binary files a/docs/images/taxprofiler_tube.png and b/docs/images/taxprofiler_tube.png differ diff --git a/docs/images/taxprofiler_tube.svg b/docs/images/taxprofiler_tube.svg index c4d2403..9c5a36c 100644 --- a/docs/images/taxprofiler_tube.svg +++ b/docs/images/taxprofiler_tube.svg @@ -7,7 +7,7 @@ viewBox="0 0 555.62502 211.66668" version="1.1" id="svg5" - inkscape:version="1.2.1 (1:1.2.1+202210291243+9c6d41e410)" + inkscape:version="1.2.2 (1:1.2.2+202212051552+b0a8486541)" sodipodi:docname="taxprofiler_tube.svg" xml:space="preserve" inkscape:export-filename="taxprofiler_tube.png" @@ -36,15 +36,15 @@ fit-margin-left="0" fit-margin-right="0" fit-margin-bottom="0" - inkscape:zoom="1.0117639" - inkscape:cx="596.48301" - inkscape:cy="463.05268" + inkscape:zoom="0.50588195" + inkscape:cx="949.82634" + inkscape:cy="219.41878" inkscape:window-width="1920" - inkscape:window-height="1016" + inkscape:window-height="1043" inkscape:window-x="0" inkscape:window-y="0" inkscape:window-maximized="1" - inkscape:current-layer="g27886" + inkscape:current-layer="g10937-9-6-6" inkscape:showpageshadow="2" inkscape:deskcolor="#d1d1d1">SEQUENCINGQUALITY CONTROL(ADAPTER TRIMMING & (ADAPTER TRIMMING & MERGING)(COMPLEXITY (COMPLEXITY FILTERING)(HOST REMOVAL)(RUN MERGING)TAXONOMIC CLASSIFICATIONSUMMARY STATISTICSfastpfastpAdapterRemovalBBDukPRINSEQ++Short ReadsAll ReadsProfileMultiple databasesLog FilesLong ReadsBowtie2samtoolsstatssamtoolsstatscatminimap2FiltlongMultiQCKronaPorechopBrackenBrackenTaxpastaDIAMONDFastQCfalcoFastQCfalcoFastQCfalcoFastQCfalco(LENGTH (LENGTH FILTERING)tsvhtml(OPTIONAL STEP)html + d="m -519.98638,169.80106 2.80633,0.93544 -0.93543,-2.80634 z" + id="path1461-3-8-1" />