mirror of
https://github.com/MillironX/taxprofiler.git
synced 2024-11-10 23:13:09 +00:00
Enumerating taxon
This commit is contained in:
parent
f4480feb9b
commit
7afda265c5
1 changed files with 30 additions and 6 deletions
|
@ -10,7 +10,10 @@
|
||||||
"type": "object",
|
"type": "object",
|
||||||
"fa_icon": "fas fa-terminal",
|
"fa_icon": "fas fa-terminal",
|
||||||
"description": "Define where the pipeline should find input data and save output data.",
|
"description": "Define where the pipeline should find input data and save output data.",
|
||||||
"required": ["input", "outdir"],
|
"required": [
|
||||||
|
"input",
|
||||||
|
"outdir"
|
||||||
|
],
|
||||||
"properties": {
|
"properties": {
|
||||||
"input": {
|
"input": {
|
||||||
"type": "string",
|
"type": "string",
|
||||||
|
@ -173,7 +176,14 @@
|
||||||
"description": "Method used to save pipeline results to output directory.",
|
"description": "Method used to save pipeline results to output directory.",
|
||||||
"help_text": "The Nextflow `publishDir` option specifies which intermediate files should be saved to the output directory. This option tells the pipeline what method should be used to move these files. See [Nextflow docs](https://www.nextflow.io/docs/latest/process.html#publishdir) for details.",
|
"help_text": "The Nextflow `publishDir` option specifies which intermediate files should be saved to the output directory. This option tells the pipeline what method should be used to move these files. See [Nextflow docs](https://www.nextflow.io/docs/latest/process.html#publishdir) for details.",
|
||||||
"fa_icon": "fas fa-copy",
|
"fa_icon": "fas fa-copy",
|
||||||
"enum": ["symlink", "rellink", "link", "copy", "copyNoFollow", "move"],
|
"enum": [
|
||||||
|
"symlink",
|
||||||
|
"rellink",
|
||||||
|
"link",
|
||||||
|
"copy",
|
||||||
|
"copyNoFollow",
|
||||||
|
"move"
|
||||||
|
],
|
||||||
"hidden": true
|
"hidden": true
|
||||||
},
|
},
|
||||||
"email_on_fail": {
|
"email_on_fail": {
|
||||||
|
@ -294,7 +304,10 @@
|
||||||
"shortread_clipmerge_tool": {
|
"shortread_clipmerge_tool": {
|
||||||
"type": "string",
|
"type": "string",
|
||||||
"default": "fastp",
|
"default": "fastp",
|
||||||
"enum": ["fastp", "adapterremoval"]
|
"enum": [
|
||||||
|
"fastp",
|
||||||
|
"adapterremoval"
|
||||||
|
]
|
||||||
},
|
},
|
||||||
"shortread_clipmerge_skipadaptertrim": {
|
"shortread_clipmerge_skipadaptertrim": {
|
||||||
"type": "boolean"
|
"type": "boolean"
|
||||||
|
@ -335,7 +348,10 @@
|
||||||
"shortread_complexityfilter_prinseqplusplus_mode": {
|
"shortread_complexityfilter_prinseqplusplus_mode": {
|
||||||
"type": "string",
|
"type": "string",
|
||||||
"default": "entropy",
|
"default": "entropy",
|
||||||
"enum": ["entropy", "dust"]
|
"enum": [
|
||||||
|
"entropy",
|
||||||
|
"dust"
|
||||||
|
]
|
||||||
},
|
},
|
||||||
"shortread_complexityfilter_prinseqplusplus_dustscore": {
|
"shortread_complexityfilter_prinseqplusplus_dustscore": {
|
||||||
"type": "number",
|
"type": "number",
|
||||||
|
@ -387,7 +403,15 @@
|
||||||
},
|
},
|
||||||
"kaiju_taxon_name": {
|
"kaiju_taxon_name": {
|
||||||
"type": "string",
|
"type": "string",
|
||||||
"default": "species"
|
"default": "species",
|
||||||
|
"enum": [
|
||||||
|
"phylum",
|
||||||
|
"class",
|
||||||
|
"order",
|
||||||
|
"family",
|
||||||
|
"genus",
|
||||||
|
"species"
|
||||||
|
]
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
}
|
}
|
Loading…
Reference in a new issue