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This commit is contained in:
James Fellows Yates 2022-12-12 11:04:21 +01:00
parent 460f3ca157
commit 7c66968fef
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subworkflows/local/db_check.nf
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@ -12,6 +12,7 @@ workflow DB_CHECK {
ch_versions = Channel.empty() ch_versions = Channel.empty()
// special check to check _between_ rows, for which we must group rows together // special check to check _between_ rows, for which we must group rows together
// note: this will run in parallel to within-row validity, but we can assume this will run faster thus will fail first
Channel.fromPath(dbsheet) Channel.fromPath(dbsheet)
.splitCsv ( header:true, sep:',' ) .splitCsv ( header:true, sep:',' )
.map {[it.tool, it.db_name] } .map {[it.tool, it.db_name] }