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ljmesi 2022-03-18 10:48:06 +01:00
parent 41b3d8db82
commit 7f7ddc9f14
1 changed files with 1 additions and 1 deletions
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bin/check_samplesheet.py
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@ -173,7 +173,7 @@ def check_samplesheet(file_in, file_out):
## Auto-detect paired-end/single-end
if sample and fastq_1 and fastq_2: ## Paired-end short reads
sample_info.extend(["0", fastq_1, fastq_2, fasta])
elif sample and fastq_1 and not fastq_2: ## Single-end short reads
elif sample and fastq_1 and not fastq_2: ## Single-end short/long fastq reads
sample_info.extend(["1", fastq_1, fastq_2, fasta])
elif (
sample and fasta and not fastq_1 and not fastq_2