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fix: emit tool versions
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1 changed files with 6 additions and 0 deletions
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@ -12,6 +12,7 @@ process KRAKEN_STANDARD_REPORT {
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output:
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tuple val(meta), path(result), emit: report
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path 'versions.yml' , emit: versions
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when:
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task.ext.when == null || task.ext.when
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@ -21,6 +22,11 @@ process KRAKEN_STANDARD_REPORT {
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result = "${prefix}_standardized.kraken2.report.txt"
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"""
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cut -f1-3,6-8 '${report}' > '${result}'
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cat <<-END_VERSIONS > versions.yml
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"${task.process}":
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cut: \$(echo \$(cut --version 2>&1) | sed 's/^.*(GNU coreutils) //; s/ Copyright.*\$//')
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END_VERSIONS
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"""
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}
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