From ebdd5683b248d2664fbd41fdc32cb5bf06e2e4ab Mon Sep 17 00:00:00 2001
From: "James A. Fellows Yates" <jfy133@gmail.com>
Date: Fri, 3 Jun 2022 22:33:48 +0200
Subject: [PATCH] Apply suggestions from code review

---
 subworkflows/local/profiling.nf | 2 --
 1 file changed, 2 deletions(-)

diff --git a/subworkflows/local/profiling.nf b/subworkflows/local/profiling.nf
index b83c78f..9bae127 100644
--- a/subworkflows/local/profiling.nf
+++ b/subworkflows/local/profiling.nf
@@ -67,7 +67,6 @@ workflow PROFILING {
                                 .map {
                                     meta, reads, db_meta, db ->
                                         def sam_format = params.malt_save_reads ? ' --alignments ./ -za false' : ""
-                                        // TODO wut? [9a/a441d6] Submitted process > NFCORE_TAXPROFILER:TAXPROFILER:PROFILING:MALT_RUN (null)
                                         def temp_meta = [ id: meta['db_name'] ]
                                         def new_db_meta = db_meta.clone()
                                         new_db_meta['db_params'] = db_meta['db_params'] + sam_format
@@ -76,7 +75,6 @@ workflow PROFILING {
                                         [ new_meta, reads, db ]
                                 }
                                 .groupTuple(by: [0,2])
-                                .dump(tag: "into_malt")
                                 .multiMap {
                                     it ->
                                         reads: [ it[0], it[1].flatten() ]