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refactor: turn warning into error

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This commit is contained in:
Moritz E. Beber 2022-10-17 17:35:41 +02:00
parent 48b00b7d62
commit 8768a16d63
1 changed files with 1 additions and 1 deletions
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workflows/taxprofiler.nf
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@ -41,7 +41,7 @@ if (params.longread_hostremoval_index ) { ch_longread_reference_index = fi
if (params.diamond_save_reads ) log.warn "[nf-core/taxprofiler] DIAMOND only allows output of a single format. As --diamond_save_reads supplied, only aligned reads in SAM format will be produced, no taxonomic profiles will be available."
if (params.run_malt && params.run_krona && !params.krona_taxonomy_directory) log.warn "[nf-core/taxprofiler] Krona can only be run on MALT output if path to Krona taxonomy database supplied to --krona_taxonomy_directory. Krona will not be executed in this run for MALT."
if (params.run_bracken && !params.run_kraken2) log.warn '[nf-core/taxprofiler] You are attempting to run Bracken without running kraken2. This is not possible! Please set --run_kraken2 as well.'
if (params.run_bracken && !params.run_kraken2) exit 1, 'ERROR: [nf-core/taxprofiler] You are attempting to run Bracken without running kraken2. This is not possible! Please set --run_kraken2 as well.'
/*
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