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Fix output tuple for reads

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This commit is contained in:
James Fellows Yates 2022-04-08 20:02:22 +02:00
parent 35cb6e042a
commit 8839fe22b8
1 changed files with 9 additions and 1 deletions
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workflows/taxprofiler.nf
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@ -149,7 +149,15 @@ workflow TAXPROFILER {
ch_reads_for_cat_branch.cat.dump(tag: "for_catting") ch_reads_for_cat_branch.cat.dump(tag: "for_catting")
ch_reads_runmerged = CAT_FASTQ ( ch_reads_for_cat_branch.cat ).reads.mix( ch_reads_for_cat_branch.skip ) ch_reads_runmerged = CAT_FASTQ ( ch_reads_for_cat_branch.cat ).reads
.mix( ch_reads_for_cat_branch.skip )
.map {
meta, reads ->
[ meta, [ reads ].flatten() ]
}
ch_reads_runmerged.dump(tag: "ch_reads_runmerged" )
} else { } else {
ch_reads_runmerged = ch_shortreads_filtered ch_reads_runmerged = ch_shortreads_filtered