From dd194f3f47f8746826aa49b3e490b3e2f9cb809e Mon Sep 17 00:00:00 2001 From: "James A. Fellows Yates" Date: Sun, 4 Sep 2022 15:01:58 +0000 Subject: [PATCH] Fix mOTUs CI and old param warn --- .github/workflows/ci.yml | 3 --- conf/test_motus.config | 4 ++-- 2 files changed, 2 insertions(+), 5 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 106de1b..5cea5b7 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -64,9 +64,6 @@ jobs: name: Test mOTUs with workflow parameters if: ${{ github.event_name != 'push' || (github.event_name == 'push' && github.repository == 'nf-core/taxprofiler') }} runs-on: ubuntu-latest - env: - NXF_VER: ${{ matrix.nxf_ver }} - NXF_ANSI_LOG: false strategy: matrix: NXF_VER: diff --git a/conf/test_motus.config b/conf/test_motus.config index 1405447..d5eb8f8 100644 --- a/conf/test_motus.config +++ b/conf/test_motus.config @@ -24,8 +24,8 @@ params { // TODO nf-core: Give any required params for the test so that command line flags are not needed input = 'https://raw.githubusercontent.com/nf-core/test-datasets/taxprofiler/samplesheet.csv' databases = 'database_motus.csv' - perform_shortread_clipmerge = false - perform_longread_clip = false + perform_shortread_qc = false + perform_longread_qc = false perform_shortread_complexityfilter = false perform_shortread_hostremoval = false perform_longread_hostremoval = false