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Start adding filter for long read and MP3
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1 changed files with 5 additions and 2 deletions
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@ -202,8 +202,11 @@ workflow PROFILING {
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ch_input_for_metaphlan3 = ch_input_for_profiling.metaphlan3
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.filter{
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if (it[0].is_fasta) log.warn "[nf-core/taxprofiler] MetaPhlAn3 currently does not accept FASTA files as input. Skipping MetaPhlAn3 for sample ${it[0].id}."
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!it[0].is_fasta
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meta, report ->
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if (meta.is_fasta) log.warn "[nf-core/taxprofiler] MetaPhlAn3 currently does not accept FASTA files as input. Skipping MetaPhlAn3 for sample ${meta.id}."
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!meta.is_fasta
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if ( meta['instrument_platform'] == 'OXFORD_NANOPORE' ) log.warn "[nf-core/taxprofiler] MetaPhlAn3 has not been evaluated for Nanopore data. Skipping MetaPhlAn3 for sample ${meta.id}."
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meta['tool'] == 'metaphlan3' && meta['instrument_platform'] != 'OXFORD_NANOPORE'
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}
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.multiMap {
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it ->
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