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Add list of expected tools in MultiQC report [skip ci]
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@ -427,6 +427,27 @@ Results generated by MultiQC collate pipeline QC from supported tools e.g. FastQ
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All tools in taxprofiler supported by MultiQC will have a dedicated section showing summary statistics of each tool based on information stored in log files.
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You can expect in the MultiQC reports either sections and/or general stats columns for the following tools:
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- fastqc
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- adapterRemoval
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- fastp
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- bbduk
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- prinseqplusplus
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- porechop
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- filtlong
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- bowtie2
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- minimap2
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- samtools (stats)
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- kraken
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- bracken
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- centrifuge
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- kaiju
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- metaphlan
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- diamond
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- malt
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- motus
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> ℹ️ The 'General Stats' table by default will only show statistics referring to pre-processing steps, and will not display possible values from each classifier/profiler, unless turned on by the user within the 'Configure Columns' menu or via a custom MultiQC config file (`--multiqc_config`)
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### Pipeline information
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