mirror of
https://github.com/MillironX/taxprofiler.git
synced 2024-11-13 07:23:10 +00:00
Add list of expected tools in MultiQC report [skip ci]
This commit is contained in:
parent
52907dcc26
commit
932dc12fb1
1 changed files with 21 additions and 0 deletions
|
@ -427,6 +427,27 @@ Results generated by MultiQC collate pipeline QC from supported tools e.g. FastQ
|
||||||
|
|
||||||
All tools in taxprofiler supported by MultiQC will have a dedicated section showing summary statistics of each tool based on information stored in log files.
|
All tools in taxprofiler supported by MultiQC will have a dedicated section showing summary statistics of each tool based on information stored in log files.
|
||||||
|
|
||||||
|
You can expect in the MultiQC reports either sections and/or general stats columns for the following tools:
|
||||||
|
|
||||||
|
- fastqc
|
||||||
|
- adapterRemoval
|
||||||
|
- fastp
|
||||||
|
- bbduk
|
||||||
|
- prinseqplusplus
|
||||||
|
- porechop
|
||||||
|
- filtlong
|
||||||
|
- bowtie2
|
||||||
|
- minimap2
|
||||||
|
- samtools (stats)
|
||||||
|
- kraken
|
||||||
|
- bracken
|
||||||
|
- centrifuge
|
||||||
|
- kaiju
|
||||||
|
- metaphlan
|
||||||
|
- diamond
|
||||||
|
- malt
|
||||||
|
- motus
|
||||||
|
|
||||||
> ℹ️ The 'General Stats' table by default will only show statistics referring to pre-processing steps, and will not display possible values from each classifier/profiler, unless turned on by the user within the 'Configure Columns' menu or via a custom MultiQC config file (`--multiqc_config`)
|
> ℹ️ The 'General Stats' table by default will only show statistics referring to pre-processing steps, and will not display possible values from each classifier/profiler, unless turned on by the user within the 'Configure Columns' menu or via a custom MultiQC config file (`--multiqc_config`)
|
||||||
|
|
||||||
### Pipeline information
|
### Pipeline information
|
||||||
|
|
Loading…
Reference in a new issue