millironx/taxprofiler
1
0
Fork 0
mirror of https://github.com/MillironX/taxprofiler.git synced 2024-11-13 07:33:08 +00:00
Code Issues Releases Packages Activity

Update docs/output.md

Browse source 
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
This commit is contained in:
Sofia Stamouli 2023-01-11 16:47:18 +01:00 committed by GitHub
parent 719fc3cf5d
commit 953f9585c9
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
1 changed files with 1 additions and 1 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

2
docs/output.md
View file

@ -235,7 +235,7 @@ You will only recieve the FASTQs and `*classifiedreads.txt` file if you supply `
<summary>Output files</summary>
- `krakenuniq/`
- <db_name>/
- `<db_name>/`
- `<sample_id>_<db_name>.classified.fastq.gz`: FASTQ file containing all reads that had a hit against a reference in the database for a given sample
- `<sample_id>_<db_name>.unclassified.fastq.gz`: FASTQ file containing all reads that did not have a hit in the database for a given sample
- `<sample_id>_<db_name>.report.txt`: A Kraken2-style report that summarises the fraction abundance, taxonomic ID, number of Kmers, taxonomic path of all the hits, with an additional column for k-mer coverage, that allows for more accurate distinguishing between false-positive/true-postitive hits