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fix: include local module

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This commit is contained in:
Moritz E. Beber 2022-10-14 14:47:08 +02:00
parent 9dc819ceff
commit 95621ebd8a
1 changed files with 1 additions and 0 deletions
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subworkflows/local/profiling.nf
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@ -5,6 +5,7 @@
include { MALT_RUN } from '../../modules/nf-core/malt/run/main' include { MALT_RUN } from '../../modules/nf-core/malt/run/main'
include { MEGAN_RMA2INFO as MEGAN_RMA2INFO_TSV } from '../../modules/nf-core/megan/rma2info/main' include { MEGAN_RMA2INFO as MEGAN_RMA2INFO_TSV } from '../../modules/nf-core/megan/rma2info/main'
include { KRAKEN2_KRAKEN2 } from '../../modules/nf-core/kraken2/kraken2/main' include { KRAKEN2_KRAKEN2 } from '../../modules/nf-core/kraken2/kraken2/main'
include { KRAKEN_STANDARD_REPORT } from '../../modules/local/kraken_standard_report'
include { BRACKEN_BRACKEN } from '../../modules/nf-core/bracken/bracken/main' include { BRACKEN_BRACKEN } from '../../modules/nf-core/bracken/bracken/main'
include { CENTRIFUGE_CENTRIFUGE } from '../../modules/nf-core/centrifuge/centrifuge/main' include { CENTRIFUGE_CENTRIFUGE } from '../../modules/nf-core/centrifuge/centrifuge/main'
include { CENTRIFUGE_KREPORT } from '../../modules/nf-core/centrifuge/kreport/main' include { CENTRIFUGE_KREPORT } from '../../modules/nf-core/centrifuge/kreport/main'