diff --git a/nextflow.config b/nextflow.config index e08a1dc..80038ea 100644 --- a/nextflow.config +++ b/nextflow.config @@ -300,7 +300,7 @@ dag { manifest { name = 'nf-core/taxprofiler' - author = """nf-core community""" + author = """James A. Fellows Yates, Sofia Stamouli, Moritz E. Beber, Lauri Mesilaakso, Thomas A. Christensen II, Jianhong Ou, Mahwash Jamy, Maxime Borry, Rafal Stepien, Tanja Normark""" homePage = 'https://github.com/nf-core/taxprofiler' description = """Taxonomic classification and profiling of shotgun metagenomic data""" mainScript = 'main.nf' diff --git a/subworkflows/local/db_check.nf b/subworkflows/local/db_check.nf index 35240ed..21ed21d 100644 --- a/subworkflows/local/db_check.nf +++ b/subworkflows/local/db_check.nf @@ -63,8 +63,8 @@ def validate_db_rows(LinkedHashMap row){ def expected_headers = ['tool', 'db_name', 'db_params', 'db_path'] if ( !row.keySet().containsAll(expected_headers) ) exit 1, "[nf-core/taxprofiler] ERROR: Invalid database input sheet - malformed column names. Please check input TSV. Column names should be: ${expected_keys.join(", ")}" - // valid tools specified// TIFNISIH LIST - def expected_tools = [ "bracken", "centrifuge", "diamond", "kaiju", "kraken2", "krakenuniq", "malt", "metaphlan3", "motus" ] + // valid tools specified + def expected_tools = [ "bracken", "centrifuge", "diamond", "kaiju", "kraken2", "krakenuniq", "malt", "metaphlan3", "motus" ] if ( !expected_tools.contains(row.tool) ) exit 1, "[nf-core/taxprofiler] ERROR: Invalid tool name. Please see documentation for all supported profilers. Error in: ${row}" // detect quotes in params