diff --git a/modules.json b/modules.json index 9e6428a..2494fc1 100644 --- a/modules.json +++ b/modules.json @@ -24,12 +24,12 @@ "multiqc": { "git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d" }, - "untar": { - "git_sha": "e080f4c8acf5760039ed12ec1f206170f3f9a918" - }, "porechop": { "git_sha": "e20e57f90b6787ac9a010a980cf6ea98bd990046" + }, + "untar": { + "git_sha": "e080f4c8acf5760039ed12ec1f206170f3f9a918" } } } -} +} \ No newline at end of file diff --git a/modules/nf-core/modules/kraken2/kraken2/main.nf b/modules/nf-core/modules/kraken2/kraken2/main.nf index 52351f5..3ec5df5 100644 --- a/modules/nf-core/modules/kraken2/kraken2/main.nf +++ b/modules/nf-core/modules/kraken2/kraken2/main.nf @@ -32,12 +32,11 @@ process KRAKEN2_KRAKEN2 { --threads $task.cpus \\ --unclassified-out $unclassified \\ --classified-out $classified \\ - $args \\ --report ${prefix}.kraken2.report.txt \\ --gzip-compressed \\ $paired \\ + $args \\ $reads - pigz -p $task.cpus *.fastq