millironx/taxprofiler
1
0
Fork 0
mirror of https://github.com/MillironX/taxprofiler.git synced 2024-09-21 04:42:04 +00:00
Code Issues Releases Packages Activity

Fix mistake in previous upstream merge with AR2 output channel for settings file

Browse source
This commit is contained in:
James Fellows Yates 2022-04-05 13:17:54 +02:00
parent 4dbd0ddc73
commit 98f082d7b6
2 changed files with 4 additions and 3 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

5
subworkflows/local/shortread_adapterremoval.nf
View file

@ -75,9 +75,10 @@ workflow SHORTREAD_ADAPTERREMOVAL {
ch_versions = ch_versions.mix( ADAPTERREMOVAL_SINGLE.out.versions.first() )
ch_versions = ch_versions.mix( ADAPTERREMOVAL_PAIRED.out.versions.first() )
ch_multiqc_files = ch_multiqc_files.mix(
ADAPTERREMOVAL_PAIRED.out.log,
ADAPTERREMOVAL_SINGLE.out.log
ADAPTERREMOVAL_PAIRED.out.settings,
ADAPTERREMOVAL_SINGLE.out.settings
)
emit:

2
workflows/taxprofiler.nf
View file

@ -222,7 +222,7 @@ workflow TAXPROFILER {
}
if (params.shortread_complexityfilter){
ch_multiqc_files = ch_multiqc_files.mix( SHORTREAD_COMPLEXITYFILTERING.out.mqc.collect{it[1]}.ifEmpty([]) )
ch_multiqc_files = ch_multiqc_files.mix( SHORTREAD_COMPLEXITYFILTERING.out.mqc.collect{it[1]}.ifEmpty([]) )
ch_versions = ch_versions.mix( SHORTREAD_COMPLEXITYFILTERING.out.versions )
}