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Fix mistake in previous upstream merge with AR2 output channel for settings file

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This commit is contained in:
James Fellows Yates 2022-04-05 13:17:54 +02:00
parent 4dbd0ddc73
commit 98f082d7b6
2 changed files with 4 additions and 3 deletions
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5
subworkflows/local/shortread_adapterremoval.nf
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@ -75,9 +75,10 @@ workflow SHORTREAD_ADAPTERREMOVAL {
ch_versions = ch_versions.mix( ADAPTERREMOVAL_SINGLE.out.versions.first() ) ch_versions = ch_versions.mix( ADAPTERREMOVAL_SINGLE.out.versions.first() )
ch_versions = ch_versions.mix( ADAPTERREMOVAL_PAIRED.out.versions.first() ) ch_versions = ch_versions.mix( ADAPTERREMOVAL_PAIRED.out.versions.first() )
ch_multiqc_files = ch_multiqc_files.mix( ch_multiqc_files = ch_multiqc_files.mix(
ADAPTERREMOVAL_PAIRED.out.log, ADAPTERREMOVAL_PAIRED.out.settings,
ADAPTERREMOVAL_SINGLE.out.log ADAPTERREMOVAL_SINGLE.out.settings
) )
emit: emit:

2
workflows/taxprofiler.nf
View file

@ -222,7 +222,7 @@ workflow TAXPROFILER {
} }
if (params.shortread_complexityfilter){ if (params.shortread_complexityfilter){
ch_multiqc_files = ch_multiqc_files.mix( SHORTREAD_COMPLEXITYFILTERING.out.mqc.collect{it[1]}.ifEmpty([]) ) ch_multiqc_files = ch_multiqc_files.mix( SHORTREAD_COMPLEXITYFILTERING.out.mqc.collect{it[1]}.ifEmpty([]) )
ch_versions = ch_versions.mix( SHORTREAD_COMPLEXITYFILTERING.out.versions ) ch_versions = ch_versions.mix( SHORTREAD_COMPLEXITYFILTERING.out.versions )
} }