diff --git a/workflows/taxprofiler.nf b/workflows/taxprofiler.nf index 99a1685..54ede13 100644 --- a/workflows/taxprofiler.nf +++ b/workflows/taxprofiler.nf @@ -168,7 +168,7 @@ workflow TAXPROFILER { .dump(tag: "input_metaphlan3") .multiMap { it -> - reads: [it[0] + it[2], it[1][0]] + reads: [it[0] + it[2], it[1]] db: it[3] } @@ -217,6 +217,7 @@ workflow TAXPROFILER { // TODO MALT results overwriting per database? // TODO Versions for Karken/MALT not report? + // TODO create multiQC module for metaphlan MULTIQC ( ch_multiqc_files.collect() )