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Add helptext

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sofstam 2023-02-27 13:49:02 +01:00
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commit 99fe8adb1b
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nextflow_schema.json
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@ -520,25 +520,27 @@
"taxpasta_taxonomy_dir": {
"type": "string",
"description": "The path to a directory containing taxdump files.",
"help_text": "At least nodes.dmp and names.dmp are required. A merged.dmp file is optional."
"help_text": "This arguments provides the path to the directory containing taxdump files. At least nodes.dmp and names.dmp are required. A merged.dmp file is optional. \n\nModifies tool parameter(s):\n-taxpasta: `--taxpasta_taxonomy_dir`"
},
"taxpasta_add_name": {
"type": "boolean",
"description": "Add the taxon name to the output."
"description": "Add the taxon name to the output.",
"help_text": "The standard output format of taxpasta is a two-column table including the read counts and the integer taxonomic ID. The taxon name can be added as additional information to the output table.\n\nModifies tool parameter(s):\n- taxpasta: `taxpasta_add_name`"
},
"taxpasta_add_rank": {
"type": "boolean",
"description": "Add the taxon rank to the output."
"description": "Add the taxon rank to the output.",
"help_text": "The standard output format of taxpasta is a two-column table including the read counts and the integer taxonomic ID. The taxon rank can be added as additional information to the output table.\n\nModifies tool parameter(s):\n- taxpasta: `taxpasta_add_rank`"
},
"taxpasta_add_lineage": {
"type": "boolean",
"description": "Add the taxon's entire lineage to the output.",
"help_text": "These are taxon names separated by semi-colons. "
"help_text": "\nThe standard output format of taxpasta is a two-column table including the read counts and the integer taxonomic ID. The taxon's entire lineage with the taxon names separated by semi-colons can be added as additional information to the output table.\n\nModifies tool parameter(s):\n- taxpasta: `taxpasta_add_lineage`\n"
},
"taxpasta_add_idlineage": {
"type": "boolean",
"description": "Add the taxon's entire lineage to the output.",
"help_text": "These are taxon identifiers separated by semi-colons. "
"help_text": "\nThe standard output format of taxpasta is a two-column table including the read counts and the integer taxonomic ID. The taxon's entire lineage with the taxon identifiers separated by semi-colons can be added as additional information to the output table.\n\nModifies tool parameter(s):\n- taxpasta: `taxpasta_add_idlineage`\n"
}
},
"fa_icon": "fas fa-chart-line"